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<Paper uid="W04-0711">
  <Title>BioAR: Anaphora Resolution for Relating Protein Names to Proteome Database Entries</Title>
  <Section position="8" start_page="0" end_page="0" type="concl">
    <SectionTitle>
5 Conclusion
</SectionTitle>
    <Paragraph position="0"> BioAR identi es the antecedents of anaphoric noun phrases that appear in the results of BioIE. The system further identi es the proteins which contain the domains referred to by anaphoric expressions by utilizing several patterns which describe their relations. The system also identi es the missing arguments of biological interactions by utilizing biological interaction patterns. Finally, the system grounds the protein-referring phrases with the most relevant Swiss-Prot entries by consulting the species information of the proteins.</Paragraph>
    <Paragraph position="1"> We believe that anaphora resolution with database entries may not be addressed in other domains as straightforwardly as in this paper, since there are quite few comprehensive resources with actual entities. The task of grounding the protein-referring phrases in the results of BioIE with Swiss-Prot entries is crucial to building up incorporated protein pathways consisting of the biological interactions extracted by BioIE. We are currently working on integrating BioIE, BioAR, and other systems for ontology manipulation and information visualization for synergistic knowledge discovery.</Paragraph>
  </Section>
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